RiD-kit
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RiD-kit
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Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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W
A
add_file() (rid.task.task.Task method)
add_property() (rid.task.task.Task method)
AdjustTrustLevel (class in rid.op.adjust_trust_level)
B
build_force() (rid.nn.model.Model method)
C
CalcMF (class in rid.op.calc_mf)
check_basic_argument() (in module rid.common.gromacs.mdp)
check_new_data() (in module rid.nn.data)
check_port_status() (in module rid.entrypoint.server)
Cluster (class in rid.select.cluster)
collect_data() (in module rid.nn.data)
CollectData (class in rid.op.prep_data)
compute_statistic() (rid.nn.model.Model method)
compute_std() (in module rid.select.model_devi)
Config (class in rid.nn.train_net)
ConfSelector (class in rid.select.conf_select)
cv_dist() (in module rid.select.cluster)
D
DataGenerator (class in rid.superop.data)
dump_json() (in module rid.utils.files)
E
execute() (rid.op.adjust_trust_level.AdjustTrustLevel method)
(rid.op.calc_mf.CalcMF method)
(rid.op.prep_data.CollectData method)
(rid.op.prep_data.MergeData method)
(rid.op.prep_rid.PrepRiD method)
(rid.op.prep_select.PrepSelect method)
(rid.op.recorder.Recorder method)
(rid.op.run_label.RunLabel method)
(rid.op.run_train.TrainModel method)
Exploration (class in rid.superop.exploration)
F
files (rid.task.task.Task property)
forward_ports() (in module rid.entrypoint.server)
freeze_model() (in module rid.nn.freeze)
G
get_batch_size() (rid.nn.model.Reader method)
get_cluster_selection() (rid.select.cluster.Cluster method)
get_data() (rid.nn.model.Reader method)
get_grompp_cmd() (in module rid.common.gromacs.command)
(in module rid.common.sampler.command)
get_input_sign() (rid.op.adjust_trust_level.AdjustTrustLevel class method)
(rid.op.calc_mf.CalcMF class method)
(rid.op.prep_data.CollectData class method)
(rid.op.prep_data.MergeData class method)
(rid.op.prep_rid.PrepRiD class method)
(rid.op.prep_select.PrepSelect class method)
(rid.op.recorder.Recorder class method)
(rid.op.run_label.RunLabel class method)
(rid.op.run_train.TrainModel class method)
get_mdrun_cmd() (in module rid.common.gromacs.command)
(in module rid.common.sampler.command)
get_output_sign() (rid.op.adjust_trust_level.AdjustTrustLevel class method)
(rid.op.calc_mf.CalcMF class method)
(rid.op.prep_data.CollectData class method)
(rid.op.prep_data.MergeData class method)
(rid.op.prep_rid.PrepRiD class method)
(rid.op.prep_select.PrepSelect class method)
(rid.op.recorder.Recorder class method)
(rid.op.run_label.RunLabel class method)
(rid.op.run_train.TrainModel class method)
get_parm() (in module rid.nn.train_net)
get_train_size() (rid.nn.model.Reader method)
I
init_executor() (in module rid.utils.set_config)
init_keys (rid.flow.loop.ReinforcedDynamics property)
InitBlock (class in rid.superop.blocks)
input_artifacts (rid.flow.loop.ReinforcedDynamics property)
(rid.flow.loop.ReinforcedDynamicsLoop property)
(rid.superop.blocks.InitBlock property)
(rid.superop.blocks.IterBlock property)
(rid.superop.data.DataGenerator property)
(rid.superop.exploration.Exploration property)
(rid.superop.label.Label property)
(rid.superop.selector.Selector property)
input_parameters (rid.flow.loop.ReinforcedDynamics property)
(rid.flow.loop.ReinforcedDynamicsLoop property)
(rid.superop.blocks.InitBlock property)
(rid.superop.blocks.IterBlock property)
(rid.superop.data.DataGenerator property)
(rid.superop.exploration.Exploration property)
(rid.superop.label.Label property)
(rid.superop.selector.Selector property)
IterBlock (class in rid.superop.blocks)
K
keys (rid.flow.loop.ReinforcedDynamicsLoop property)
(rid.superop.blocks.InitBlock property)
(rid.superop.blocks.IterBlock property)
(rid.superop.data.DataGenerator property)
(rid.superop.exploration.Exploration property)
(rid.superop.label.Label property)
(rid.superop.selector.Selector property)
L
Label (class in rid.superop.label)
list_to_string() (in module rid.utils.format)
load_graph() (in module rid.common.tensorflow.graph)
(rid.nn.model.Model method)
load_json() (in module rid.utils.files)
load_pkl() (in module rid.utils.files)
load_txt() (in module rid.utils.files)
loop_keys (rid.flow.loop.ReinforcedDynamics property)
M
make_md_mdp_from_config() (in module rid.common.gromacs.mdp)
make_md_mdp_string() (in module rid.common.gromacs.mdp)
make_mdp_from_json() (in module rid.common.gromacs.mdp)
make_std() (in module rid.select.model_devi)
make_threshold() (rid.select.cluster.Cluster method)
make_train() (in module rid.nn.data)
MergeData (class in rid.op.prep_data)
mk_cluster() (in module rid.select.cluster)
mk_dist() (in module rid.select.cluster)
Model (class in rid.nn.model)
modify_define() (in module rid.common.gromacs.mdp)
modify_output() (in module rid.common.gromacs.mdp)
module
rid
rid.common
rid.common.gromacs
rid.common.gromacs.command
rid.common.gromacs.gmx_constant
rid.common.gromacs.mdp
rid.common.gromacs.trjconv
rid.common.lammps
rid.common.lammps.lmp_constant
rid.common.sampler
rid.common.sampler.command
rid.common.tensorflow
rid.common.tensorflow.graph
rid.constants
rid.entrypoint
rid.entrypoint.cli
rid.entrypoint.info
rid.entrypoint.server
rid.flow
rid.flow.loop
rid.main
rid.nn
rid.nn.data
rid.nn.freeze
rid.nn.model
rid.nn.train_net
rid.op
rid.op.adjust_trust_level
rid.op.calc_mf
rid.op.prep_data
rid.op.prep_rid
rid.op.prep_select
rid.op.recorder
rid.op.run_label
rid.op.run_train
rid.select
rid.select.cluster
rid.select.conf_select
rid.select.model_devi
rid.superop
rid.superop.blocks
rid.superop.data
rid.superop.exploration
rid.superop.label
rid.superop.selector
rid.task
rid.task.task
rid.tools
rid.utils
rid.utils.command
rid.utils.files
rid.utils.format
rid.utils.path
rid.utils.set_config
N
normalize_resources() (in module rid.utils.set_config)
O
output_artifacts (rid.flow.loop.ReinforcedDynamics property)
(rid.flow.loop.ReinforcedDynamicsLoop property)
(rid.superop.blocks.InitBlock property)
(rid.superop.blocks.IterBlock property)
(rid.superop.data.DataGenerator property)
(rid.superop.exploration.Exploration property)
(rid.superop.label.Label property)
(rid.superop.selector.Selector property)
output_parameters (rid.flow.loop.ReinforcedDynamics property)
(rid.flow.loop.ReinforcedDynamicsLoop property)
(rid.superop.blocks.InitBlock property)
(rid.superop.blocks.IterBlock property)
(rid.superop.data.DataGenerator property)
(rid.superop.exploration.Exploration property)
(rid.superop.label.Label property)
(rid.superop.selector.Selector property)
P
prep_confs() (in module rid.op.prep_rid)
prepare() (rid.nn.model.Reader method)
PrepRiD (class in rid.op.prep_rid)
PrepSelect (class in rid.op.prep_select)
print_conf() (in module rid.nn.train_net)
R
read_binary() (in module rid.utils.files)
read_txt() (in module rid.utils.files)
Reader (class in rid.nn.model)
Recorder (class in rid.op.recorder)
ReinforcedDynamics (class in rid.flow.loop)
ReinforcedDynamicsLoop (class in rid.flow.loop)
reset_batch_size() (in module rid.nn.train_net)
rid
module
rid.common
module
rid.common.gromacs
module
rid.common.gromacs.command
module
rid.common.gromacs.gmx_constant
module
rid.common.gromacs.mdp
module
rid.common.gromacs.trjconv
module
rid.common.lammps
module
rid.common.lammps.lmp_constant
module
rid.common.sampler
module
rid.common.sampler.command
module
rid.common.tensorflow
module
rid.common.tensorflow.graph
module
rid.constants
module
rid.entrypoint
module
rid.entrypoint.cli
module
rid.entrypoint.info
module
rid.entrypoint.server
module
rid.flow
module
rid.flow.loop
module
rid.main
module
rid.nn
module
rid.nn.data
module
rid.nn.freeze
module
rid.nn.model
module
rid.nn.train_net
module
rid.op
module
rid.op.adjust_trust_level
module
rid.op.calc_mf
module
rid.op.prep_data
module
rid.op.prep_rid
module
rid.op.prep_select
module
rid.op.recorder
module
rid.op.run_label
module
rid.op.run_train
module
rid.select
module
rid.select.cluster
module
rid.select.conf_select
module
rid.select.model_devi
module
rid.superop
module
rid.superop.blocks
module
rid.superop.data
module
rid.superop.exploration
module
rid.superop.label
module
rid.superop.selector
module
rid.task
module
rid.task.task
module
rid.tools
module
rid.utils
module
rid.utils.command
module
rid.utils.files
module
rid.utils.format
module
rid.utils.path
module
rid.utils.set_config
module
rid_ls() (in module rid.entrypoint.cli)
rid_rm() (in module rid.entrypoint.cli)
run_command() (in module rid.utils.command)
RunLabel (class in rid.op.run_label)
S
sample_train() (rid.nn.model.Reader method)
save_pkl() (in module rid.utils.files)
save_txt() (in module rid.utils.files)
sel_from_cluster() (in module rid.select.cluster)
select() (rid.select.conf_select.ConfSelector method)
select_from_devi() (in module rid.select.conf_select)
Selector (class in rid.superop.selector)
set_conf() (in module rid.nn.train_net)
set_directory() (in module rid.utils.path)
slice_trjconv() (in module rid.common.gromacs.trjconv)
T
Task (class in rid.task.task)
test_ef() (in module rid.select.model_devi)
test_error() (rid.nn.model.Model method)
test_error_mix() (rid.nn.model.Model method)
train() (in module rid.nn.train_net)
(rid.nn.model.Model method)
TrainModel (class in rid.op.run_train)
W
write_binary() (in module rid.utils.files)
write_txt() (in module rid.utils.files)
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